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Associate Professor Refereed Publications2014Berg C, Nehl E, Wang X, Ding Y, He N, Johnson BA, Wong FY (2014) A comparison of HIV-positive and negative MSM smokers in Chengdu, China: Quit attempts and healthcare provider intervention on smoking. AIDS Care, (Available online)2013Wu J, Zhou Y, Gao Y, Fu JS, Johnson BA, Huang C, Kim Y-M, Liu Y (2013) Estimation and uncertainty analysis of impacts of future heat waves on mortality in the Eastern United States. Environmental Health Perspectives DOI:10.1289/ehp.1306670.Raysoni AU, Stock TH, Sarnat JA, Montoya-Sosa T, Sarnat SE, Holguin F, Greenwald R, Johnson B, Li W-W (2013) Characterization of traffic-related air pollutant metrics at four schools in El Paso, Texas, USA: Implications for exposure assessment and siting schools in urban areas. Atmospheric Environment 80, 140-151. Marconi VC, Johnson BA, Wu B, Quinn-Hare A, Ordonez C, Kuritzkes DR (2013) Individual-level Early Warning Indicators for first-line virologic failure independent of adherence measures in a South African urban clinic AIDS Patient Care and STDs 27, 657-668. Khosropour CM, Johnson BA, Ricca AV, Sullivan PS (2013) A randomized trial of text messaging to enhance retention in an internet-based cohort study of men who have sex with men (MSM) J Med Internet Res (In Press) Rappaport SM, Johnson BA, Bois FY, Kupper LL, Kim S, Thomas R. (2013) Ignoring and adding errors do not improve the science. Carcinogenesis (In Press) Greenwald R, Johnson BA, Hoskins A, Dworski R. (2013) Exhaled breath condensate formate after inhaled allergen provocation in atopic asthmatics in vivo. J Asthma 50, 619-622. Johnson BA, Ribaudo H, Gulick RM, Eron JJ. (2013) Modeling clinical endpoints as a function of time of switch to second-line ART with incomplete data on switching times. Biometrics 69, 732-740. Traxinger K, Kelly C, Johnson BA, Lyles RH, Glass JD. (2013) Prognosis and epidemiology of amyotrophic lateral sclerosis: analysis of a clinic population from 1997 - 2011. Neurology: Clinical Practice 3, 313-320. Chung M, Long Q, and Johnson BA. (2013) A tutorial on rank-based coefficient estimation in small- and large-scale problems. Statistics and Computing 23, 601-614. 2012Rappaport SM, Kim S, Thomas R, Johnson BA, Bois F, and Kupper LL. (2012) Low-dose Metabolism of Benzene in Humans: Science and Obfuscation. Carcinogenesis 34, 2-9.Zora J, Sarnat SE, Raysoni AU, Greenwald R, Johnson BA, Stock TH, Holguin F, Li WW, Sarnat JA. (2012) Associations between urban air pollution and pediatric asthma control in El Paso, Texas. Science of the Total Environment 448, 56-65. Garber D, O'Mara L, Gangadhara S, McQuoid M, Zhang X, Zheng R, Gill K, Verma M, Yu T, Johnson BA, Li B, Derdeyn C, Ibegbu C, Altman J, Hunter E, Feinberg M. (2012) Deletion of specific immune modulatory genes from modified vaccine ankara-based HIV vaccines engenders immunogenicity in Rhesus macaques. Journal of Virology (In press) Long Q, Zhang X, Zhao Y, Johnson BA, Bostick RM. (2012) Modeling clinical outcome using multiple correlated functional biomarkers: A Bayesian approach. Statistical Methods in Medical Research (In press) Greenwald R, Sarnat JA, Li WW, Raysoni AU, Johnson BA, Sarnat SE, Stock TH, Holguin F, Montoya-Sosa T. (2012) Associations between source-indicative pollution metrics and increases in pulmonary inflammation and reduced lung function in a panel of asthmatic children. Air Quality, Atmosphere, and Health DOI 10.1007/s11869-012-0186-3. Li L, Eron J, Ribaudo H, Gulick RM, Johnson BA. (2012) Evaluating the effect of early versus late ARV regimen change after failure on the initial regimen: results from the AIDS Clinical Trials Group Study A5095. Journal of the American Statistical Association, 107, 542-554. Sunpath H, Wu B, Hampton J, Johnson BA, Moosa Y, Ordonez C, Kuritzkes DR, Marconi VC. (2012) High rate of K65R for ART naive patients with subtype C HIV infection failing a TDF-containing first-line regimen in South Africa.AIDS, 26, 1679-84. Sarnat S, Raysoni AU, Li W, Holguin F, Johnson BA, Flores-Luevano S, Garcia J, and Sarnat JA. (2012) Air pollution and acute respiratory response in a panel of asthmatic children along the U.S.-Mexico border. Environmental Health Perspectives, 160, 437--444. 2011Long Q, Chung M, Moreno C, Johnson BA. (2011) Risk prediction for cancer recurrence through regularized estimation with simultaneous adjustment for nonlinear clinical effects. Annals of Applied Statistics, 5, 2003-2023.Johnson BA, Long Q, Chung M. (2011) On path restoration for censored outcomes. Biometrics, 67, 1379-1388. Johnson BA, Long Q. (2011) Survival ensembles by the sum of pairwise differences. Annals of Applied Statistics, 5, 1081-1101. Long Q, Zhang X, and Johnson BA (2011) Robust estimation of area under the ROC curve using auxiliary variables in the presence of missing biomarker values. Biometrics, 67, 559-567.
2010Long Q, Johnson BA, Osunkoya A, Lai Y-H, et al. (2010) Protein-coding and microRNA biomarkers of recurrence of prostate cancer following radical prostatectomy. The American Journal of Pathology, 197, 46-54.Jain S, Elon L, DeGuzman M, Johnson BA, Frank G. (2010) Physician practice variation in the pediatric emergency department and its impact on resource utilization and quality of care. Pediatric Emergency Care, 26, 902-908. Cooper LAD, Gutman DA, Long Q, Johnson BA, Choletti SR et al. (2010) The Proneural Molecular Signature Is Enriched in Oligodendrogliomas and Predicts Improved Survival among Diffuse Gliomas. PLoS ONE 5, e12548. doi:10.1371/journal.pone.0012548.
2009Johnson BA. (2009) Rank-based estimation in the L1-regularized partly linear model for censored outcomes with application to integrated analyses of clinical predictors and gene expression data. Biostatistics 10, 659--666. [pdf] Supplement [pdf]Johnson BA. (2009) On lasso for censored data. Electronic Journal of Statistics, 3, 485-506. [pdf]
2008Taylor DJ, Kupper LL, Johnson BA, Kim S, Rappaport SM. (2008) Parametric methods for evaluating nonlinear exposure-biomarker relationships when the predictor and the response variables are measured with error. Journal of Agricultural, Biological, and Environmental Statistics 3, 367-387.Johnson BA, Lin DY, and Zeng D. (2008) Penalized estimating functions and variable seleciton in semiparametric regression models. Journal of the American Statistical Association, 103, 672-680. [pdf] Johnson BA and Peng L. (2008) Rank-based variable selection. Journal of Nonparametric Statistics, 20, 241-252.[pdf] [R code] Johnson BA. (2008) Treatment-competing events in dynamic regimes. Lifetime Data Analysis, 14, 196-215. [pdf] Johnson BA. (2008) Variable selection in semiparametric linear regression with censored data. Journal of the Royal Statistical Society, Series B, 70, 351-370. [pdf] [Correction]
2007Johnson BA, Herring AH, Ibrahim JG, and Siega-Riz AM (2007) Structured measurement error in nutritional epidemiology: applications in the pregnancy, infection, and nutrition (PIN) study. Journal of the American Statistical Association, 102, 856-866. [pdf]Johnson BA and Rappaport SM. (2007) On modeling metabolism-based biomarkers of exposure: a comparative analysis of nonlinear models with few repeated measurements. Statistics in Medicine 26, 1901-1919. [pdf] Kim S, Lan Q, Waidyanatha S, Chanock S, Johnson BA, Vermeulen R, Smith MT, Zhang L, Li G, Shen M, Yin S, Rothman N, Rappaport SM. (2007) Genetic polymorphisms and benzene metabolism in humans exposed to a wide range of air concentrations. Pharmacogenetics and Genomics 17, 789-801. Kim S, Vermeulen R, Waidyanatha S, Johnson BA, Lan Q, Rothman N, Smith MT, Zhang L, Li G, Shen M, Yin S, Rappaport SM (2007) Modeling human metabolism of benzene following occupational and environmental exposures. Cancer Epidemiology Biomarkers and Prevention 15, 2246-2252.
2006Kim S, Vermeulen R, Waidyantha S, Johnson BA, Lan Q, Rothman N, Smith MT, Zhang L, Li G, Shen M, Yin S, Rappaport SM. (2006). Using urinary biomarkers to elucidate dose-related patterns of human benzene metabolism. Carcinogensis 27, 772-781.
2005Johnson BA and Tsiatis AA. (2005) Semiparametric inference in observational duration-response studies, with duration possibly right-censored. Biometrika, 92, 605-618. [pdf] Johnson BA and Boos DD. (2005). A note on the use of kernel functions in weighted estimators. Statistics and Probability Letters 72, 345-355. Johnson BA, Kupper LL, Taylor DJ, Rappaport SM. (2005). Modeling exposure-biomarker relationships: applications of linear and nonlinear toxicokinetics. Journal of Agricultural, Biological, and Environmental Statistics 10, 440-459.
2004Johnson BA and Tsiatis AA. (2004). Estimating mean response as a function of treatment duration in an observational study, where treatment duration may be informatively censored. Biometrics 60, 315-323.[pdf]Pleil JD, Vette AF, Johnson BA, Rappaport SM (2004). Air levels of carcinogenic polycyclic aromatic hydrocarbons after the World Trade Center disaster. Proceedings of the National Academy of Sciences 101, 11685-11688. Rebeiz AG, Dery J-P, Tsiatis AA, O'Shea JC, Johnson BA, Hellkamp AS, Pieper KS, Gilchrist IC, Slater J, Muhlestein B, Joseph D, Kitt MM, and Tcheng JE. (2004). Optimal duration of Eptifibatide infusion in percutaneous coronary intervention (an ESPRIT substudy). Am J Cardiol 94, 926-929. |