present.batch(FASeg)R Documentation

Color plot of fitted data

Description

The function plots all samples together, for comparison purposes.

Usage

present.batch(h.1, lwd = 1, each.chrom = FALSE, color = c("red", "blue", "cyan", "darkgreen", "wheat", "tan", "green", "yellow", "pink", "purple", "coral", "bisque", "gold", "sienna", "salmon", "plum", rep("black", 100)))

Arguments

h.1 Fitted copy number matrix
lwd Line width to be used in the plots
each.chrom If true, one plot will be generated for each chromosome. If false, a single plot will be generated with all chromosomes lined up sequentially.
color A vector of colors, one for each sample. If not provided, some default colors will be used (see above)

Details

Value

No return value.

Note

If a plot for a single sample is desired, simply use a sub-matrix.

Author(s)

Tianwei Yu (tyu8@sph.emory.edu)

References

See Also


[Package FASeg version 2.0 Index]