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| FASeg-package | A Forward-Backward Fragment-Annealing method for the segmentation of array-based copy number data |
| band.h17 | Cytoband information based on hg17 |
| band.h18 | Cytoband information based on hg18 |
| cgh.image | Present copy number result in color image |
| FASeg | A Forward-Backward Fragment-Annealing method for the segmentation of array-based copy number data |
| faseg | Perform Forward-Backward Fragment-Annealing segmentation |
| gene.cn | Generates gene-level copy number information |
| gene.h17 | Gene location based on hg17 |
| gene.h18 | Gene location based on hg18 |
| Hind.loc.100K | Genome locations of the SNPs in the 100K Hind SNP array |
| Hind.ref.100K | The reference SNP-level distribution for 100K Hind SNP array data |
| Nsp.loc.500K | Genome locations of the SNPs in the 500K Nsp SNP array |
| Nsp.ref.500K | The reference SNP-level distribution for 500K Nsp SNP array data |
| present.batch | Color plot of fitted data |
| present.change | Side-by-side plots of raw and fitted copy number |
| present.two.enzyme | A function to compare the results of two enzymes on the same samples |
| read.CNAT.plain | A function that reads CNAT plain text output |
| read.CNT | A function to read affymetrix .cnt files |
| sample.fitted | Sample fitted data |
| sample.orig | A sample dataset |
| SNP.to.cn | A function that converts plain text outputs of probe level data to SNP-level copy number signal |
| Sty.loc.500K | Genome locations of the SNPs in the 500K Sty SNP array |
| Sty.ref.500K | The reference SNP-level distribution for 500K Sty SNP array data |
| Xba.loc.100K | Genome locations of the SNPs in the 100K Xba SNP array |
| Xba.ref.100K | The reference SNP-level distribution for 100K Xba SNP array data |