Yi-Juan Hu
  • Hu, Y. J., Satten, G. A. (2018). Testing hypotheses about microbiome using an ordination-based linear decomposition model. bioRXiv, doi.org/10.1101/229831.

  • Liao, P., Satten, G. A., Hu, Y. J.(2017). Robust inference of population structure from next-generation sequencing data with systematic differences in sequencin, in press for Bioinformatics.

  • Liao, P., Satten, G. A., Hu, Y. J.(2017). PhredEM: a Phred-score-informed genotype-calling approach for next-generation sequencing studies.Genetic Epidemiology, DOI: 10.1002/gepi.22048.

  • Hu, Y. J., Liao, P., Johnston, H. R., Allen, A. S., and Satten, G. A. (2016). Testing rare-variant association without calling genotypes allows for systematic di erences in sequencing between cases and controls. PLoS Genetics, 12(5): e1006040. doi:10.1371/journal.pgen.1006040.

  • Hu, Y. J., Sun, W., Tzeng, J. Y., Perou, C. M. Proper use of allele-speci c expression improves statistical power for cis-eQTL mapping with RNA-seq data. Journal of American Statistical Association, 110(511): 962--974.
  • Hu, Y. J., Li, Y., Auer, P. L., Lin, D. Y. (2015). Integrative analysis of sequencing and array genotype data for discovering disease association with rare mutations. Proceedings of the National Academy of Sciences, 112(4): 1019--1024.

  • Hu, Y. J., Lin, D. Y., Sun, W., and Zeng, D. (2014). A likelihood-based framework for association analysis of allele-speci c copy numbers. Journal of American Statistical Association, 109(508): 1533--1545.

  • Hu, Y. J., Berndt, S. I., Gustafsson, S., Ganna, A., Genetic Investigation of ANthropometric Traits (GIANT) Consortium, Hirschhorn, J., North, K. E., Ingelsson, E., and Lin, D. Y. (2013). Meta-Analysis of Gene-Level Associations With Rare Variants Based on Single- Variant Statistics, American Journal of Human Genetics, 93: 236--248.

  • Sun, W., Hu, Y. J. (2012). eQTL mapping using RNA-seq data, Statistics in Biosciences, doi:10.1007/s12561-012-9068-3.

  • Hu, Y. J., Lin, D. Y., Zeng, D. (2010). A General Framework for Studying Genetic Effects and Gene-Environment Interactions with Missing Data, Biostatistics, 11: 583--598.
  • Hu, Y. J., Lin, D. Y. (2010). Analysis of Untyped SNPs: Maximum Likelihood and Imputation Methods, Genetic Epidemiology, 34: 803--815.

  • Lin, D. Y., Hu, Y. J., Huang, B. E. (2008). Simple and Efficient Analysis of Disease Association with Missing Genotype Data, American Journal of Human Genetics, 82: 444--452.
  • Lin, D. Y., Hu, Y. J. (2008). Reply to Marchini and Howie, American Journal of Human Genetics, 83: 539--540.